| The Art Teacher from Drohobycz: Bruno Schulz Director |
| Ghosts and Whispers Director |
| Ghosts and Whispers Animation |
| 11 Preliminary Orbits Around Planet Lem Director |
| VadeMecum Director |
| The Doll's Breath Director |
| Quay Thanks |
| Unmistaken Hands: Ex Voto F.H. Director |
| Unmistaken Hands: Ex Voto F.H. Animation |
| Unmistaken Hands: Ex Voto F.H. Writer |
| Through the Weeping Glass: On the Consolations of Life Everlasting (Limbos & Afterbreezes in the Mütter Museum) Director |
| Through the Weeping Glass: On the Consolations of Life Everlasting (Limbos & Afterbreezes in the Mütter Museum) Sound |
| Through the Weeping Glass: On the Consolations of Life Everlasting (Limbos & Afterbreezes in the Mütter Museum) Editor |
| Through the Weeping Glass: On the Consolations of Life Everlasting (Limbos & Afterbreezes in the Mütter Museum) Animation |
| Wonderwood: Comme des garçons Director |
| Maska Director |
| Maska Writer |
| Kinoteka Ident Director |
| Inventorium Śladów Director |
| Inventorium Śladów Director of Photography |
| Inventorium Śladów Editor |
| Inventorium Śladów Sound Designer |
| Eurydice: She, So Beloved Editor |
| Eurydice: She, So Beloved Director |
| Eurydice: She, So Beloved Set Designer |
| Alice in Not So Wonderland Director |
| Alice in Not So Wonderland Writer |
| Alice in Not So Wonderland Cinematography |
| Phantom Museums: The Short Films of the Quay Brothers Director |
| The Piano Tuner of Earthquakes Director |
| The Piano Tuner of Earthquakes Writer |
| The Piano Tuner of Earthquakes Production Design |
| Quay Brothers: The Short Films 1979-2003 Director |
| The Phantom Museum: Random Forays Into the Vaults of Sir Henry Wellcome's Medical Collection Director |
| Songs for Dead Children Director |
| Sonic Cinema: Sparklehorse Director |
| Stille Nacht V: Dog Door Director |
| Stille Nacht V: Dog Door Writer |
| The Sandman Director |
| In Absentia Director |
| The Brothers Quay Collection: Ten Astonishing Short Films 1984-1993 Director |
| Institute Benjamenta, or This Dream People Call Human Life Director |
| Institute Benjamenta, or This Dream People Call Human Life Writer |
| The Summit Director |
| Stille Nacht IV: Can't Go Wrong Without You Director |
| Stille Nacht III: Tales from Vienna Woods Director |
| Anamorphosis Director |
| Anamorphosis Animation |
| Anamorphosis Art Direction |
| Anamorphosis Camera Operator |
| Anamorphosis Editor |
| Stille Nacht II: Are We Still Married? Director |
| The Comb Director |
| The Comb Writer |
| The Comb Animation |
| The Comb Art Direction |
| The Comb Camera Operator |
| The Comb Editor |
| The Calligrapher Director |
| The Calligrapher Animation |
| Ex Voto Director |
| Rain Dance Director |
| Stille Nacht I: Dramolet Director |
| The Films of the Brothers Quay Director |
| Rehearsals for Extinct Anatomies Director |
| Rehearsals for Extinct Anatomies Cinematography |
| Street of Crocodiles Director |
| Street of Crocodiles Writer |
| Street of Crocodiles Production Design |
| Street of Crocodiles Animation |
| Street of Crocodiles Editor |
| This Unnameable Little Broom Director |
| This Unnameable Little Broom Writer |
| This Unnameable Little Broom Director of Photography |
| The Cabinet of Jan Švankmajer: Prague's Alchemist of Film Director |
| The Cabinet of Jan Švankmajer Director |
| The Cabinet of Jan Švankmajer Director of Photography |
| Janacek: Intimate Excursions Director |
| Igor Stravinsky: The Paris Years Chez Pleyel 1920-1929 Director |
| The Eternal Day of Michel de Ghelderode Director |
| The Eternal Day of Michel de Ghelderode Writer |
| Punch and Judy: Tragical Comedy or Comical Tragedy Director |
| Punch and Judy: Tragical Comedy or Comical Tragedy Animation |
| Nocturna Artificialia Director |
| Nocturna Artificialia Cinematography |
| Sanatorium Under the Sign of the Hourglass Director |
| Sanatorium Under the Sign of the Hourglass Screenplay |
| Sanatorium Under the Sign of the Hourglass Animation |